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东部白松优良种源筛选及不同层次种源间差异基因分析

Screening of Superior Provenances and Study on Molecular Mechanisms of Pinus strobus L.

  • 摘要: 以10个种源的东部白松为研究材料,对其进行株高、胸径以及冠幅的测定,同时采用Illumina NovaSeq 6000高通量测序技术对不同种源的东部白松进行转录组测序,分析不同种源东部白松的生长性状与基因表达模式,揭示其生长优势形成的分子机理。结果表明:不同种源树高、胸径、材积存在显著差异(P< 0.05),冠幅差异不显著,其中2002-2、2002-3、2002-6、2002-8种源的株高和胸径最大,可列为优良种源。差异表达分析共鉴定出 26212 个差异基因(DEGs,Padjust<0.05 & |log2FC|≥1),GO和KEGG富集分析表明,生长好的东部白松的 DEGs 主要富集于半乳糖代谢、单萜生物合成等代谢通路,生长适中的侧重与植物-病原体相互作用等抗逆通路,而生长较差的则集中于基础氨基酸代谢通路。因此,东部白松种源间生长差异与基因表达功能分化密切相关,高生长层次种源通过高效代谢通路支撑生长优势,筛选出的优良种源与引种地气候条件高度契合。

     

    Abstract: AbstractIn this study, using 10 provenances of P. strobus L. as the experimental materials, their plant height, diameter at breast height (DBH), and crown width were measured, and Illumina NovaSeq 6000 high-throughput sequencing technology was applied to conduct transcriptome sequencing of different provenances on P. strobus L. The growth traits and gene expression patterns of different provenances were analyzed to reveal the molecular mechanism underlying the formation of their growth advantages. The results showed that there were significant differences in tree height, DBH, and timber volume among different provenances (p < 0.05), while there is no significant difference in crown width (p > 0.05). Among the four provenances (2002-2, 2002-3, 2002-6, 2002-8), the plant height and DBH are the largest, and they can be classified as excellect provenances. The differential expression analysis identified 26,212 differentially expressed genes (DEGs, with Padjust<0.05 & |log2FC|≥1). The GO and KEGG enrichment analyses indicated that the DEGs of P. strobus L. of well-growth were mainly enriched in metabolic pathways such as galactose metabolism and monoterpene biosynthesis; those of the moderate growth ones focused on stress resistance pathways (e.g., plant-pathogen interaction); while those of the poorly-growth oneswere concentrated in basic amino acid metabolism pathways. Therefore, the growth differences among the P. strobus L. provenances are closely related to the functional differentiation of gene expression. The superior growth-level populations support their growth advantages through efficient metabolic pathways, and the selected excellent provenances are highly compatible with the climatic conditions of the introduction site.

     

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