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蓝莓SnRK2基因家族全基因组鉴定及其盐胁迫响应分析

Genome-wide identification and salt stress response analysis of the SnRK2 gene family in blueberry

  • 摘要: SnRK2基因家族是植物特有的丝氨酸/苏氨酸蛋白激酶,为明确蓝莓SnRK2基因家族在盐胁迫中的表达模式,挖掘蓝莓响应盐胁迫的SnRK2关键基因,采用生物信息学方法从全基因组水平鉴定SnRK2家族成员,通过转录组数据和实时荧光定量PCR技术分析其在盐胁迫下的表达模式。结果表明:共鉴定到17个VcSnRK2基因家族成员,分别命名为VcSnRK2.1-2.17,VcSnRK2主要定位于细胞质和细胞骨架。系统进化树分析表明,VcSnRK2基因家族可分为3个亚组,不同亚组的基因结构与保守基序存在差异。该家族成员分布于14个支架,启动子区域富含激素及非生物胁迫响应等多种类型的顺式作用元件。基于蓝莓盐胁迫转录组数据共筛选出6个差异表达基因,结合RT-qPCR实验发现,VcSnRK2.1、VcSnRK2.13VcSnRK2.14主要在蓝莓根系中差异表达,VcSnRK2.6VcSnRK2.15主要在叶片中差异表达,说明它们可能参与蓝莓盐胁迫响应。

     

    Abstract: The SnRK2 gene family is a plant-specific serine/threonine protein kinase family. To clarify the expression pattern of the blueberry SnRK2 gene family under salt stress and explore the key SnRK2 genes involved in blueberry salt stress response, bioinformatics methods were used to identify members of the SnRK2 family at the whole-genome level. Their expression patterns under salt stress were analyzed using transcriptome data and real-time quantitative PCR (RT-qPCR) technology. The results showed that a total of 17 VcSnRK2 gene family members were identified, named VcSnRK2.1 to VcSnRK2.17, respectively. Subcellular localization prediction indicated that VcSnRK2 proteins were mainly localized in the cytoplasm and cytoskeleton. Phylogenetic tree analysis revealed that the VcSnRK2 gene family could be divided into three subgroups, and there were differences in gene structure and conserved motifs among different subgroups. The members of this family were distributed on 14 scaffolds, and the promoter regions were rich in various types of cis-acting elements, such as those responding to hormones and abiotic stresses. Based on blueberry salt stress transcriptome data, a total of 6 differentially expressed genes were screened out. Combined with RT-qPCR experiments, it was found that VcSnRK2.1, VcSnRK2.13 and VcSnRK2.14 were mainly differentially expressed in blueberry roots, while VcSnRK2.6 and VcSnRK2.15 were mainly differentially expressed in leaves, indicating that they might be involved in blueberry salt stress response.

     

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