Sampling Strategy of Primary Core Germplasm of <i>Cinnamomum camphora</i> in China

Yongda Zhong; Lipan Liu; Yanqiang Li; Zhaoxiang Wu; Aihong Yang; Shujuan Liu; Qiaoli Liu; Tengyun Liu; Faxin Yu

doi:10.11929/j.swfu.201905068

Journal of Southwest Forestry University > 2020 > 40(4): 1-13. > DOI: 10.11929/j.swfu.201905068

Yongda Zhong, Lipan Liu, Yanqiang Li, Zhaoxiang Wu, Aihong Yang, Shujuan Liu, Qiaoli Liu, Tengyun Liu, Faxin Yu. Sampling Strategy of Primary Core Germplasm of Cinnamomum camphora in China[J]. Journal of Southwest Forestry University, 2020, 40(4): 1-13. DOI: 10.11929/j.swfu.201905068

Citation:

PDF (1000 KB)

Sampling Strategy of Primary Core Germplasm of Cinnamomum camphora in China

1.
The Key Laboratory of Horticultural Plant Genetic and Improvement of Jiangxi / Institute of Biological Resources, Jiangxi Academy of Sciences, Nanchang Jiangxi 330096, China
2.
Collaborative Innovation Center of Jiangxi Typical Trees Cultivation and Utilization, Nanchang Jiangxi 330045, China

More Information

Received Date: May 01, 2019
Revised Date: May 26, 2019
Available Online: March 22, 2020
Published Date: June 30, 2020

Graphical Abstract

Abstract

Abstract

In order to optimize the conservation strategy of camphor tree germplasm resources and improve the utilization efficiency, we used 4 phenotypic data of 872 camphor trees in China, including seedling height, ground diameter, seed size and weight, to research the primary core germplasm sampling strategy of camphor tree in China in this study, from the aspects including grouping method, intra-group sampling proportional method, clustering method, sampling strategy, and overall sampling ratio. The results showed that the effect of the core germplasm constructed was different by 4 kinds of systematic sampling methods under different clustering methods and sampling strategies. Under the premise of determining the longest distance method and the preferential sampling strategy, the core germplasm construction of camphor tree was better by the logarithmic proportion method in the group. The range coincidence rate and coefficient of variation rate of the core germplasm screened by the longest distance method were higher than those of the other 6 methods, which was the best clustering method. The values of genetic diversity index, phenotypic frequency variance, phenotypic variance and the variable rate of coefficient of variation of core germplasm constructed by the preferential sampling method were all the best. The genetic diversity index, phenotypic retention ratio and phenotypic variance were the highest and the phenotypic frequency variance was the lowest at 25% sampling ratio, indicating which was the best sampling ratio to construct the primary core germplasm of camphor tree. Based on the analysis results of 6 parameters, the provenance-logarithmic proportion-longest distance clustering-preferential sampling method is finally determined as the optimal sampling strategy for the construction of core germplasm of camphor tree in China.
- Cinnamomum camphora,
- germplasm,
- core germplasm,
- sampling strategy

FullText(HTML)

References (39)

References

顾万春. 中国林木种质资源保存、研究与对策[C]//第五届全国生物多样性保护与持续利用研讨会论文集. 杭州: 中国科学院生物多样性委员会, 2002: 101−113.

Frankel O H. Genetic perspectives of germplasm conservation[M]. Cambridge: Cambridge University Press, 1984: 161−170.

Brown A H D. Core collections: a practical approach to genetic resources management [J]. Genome, 1989, 31(2): 818−824. DOI: 10.1139/g89-144

王新超, 刘振, 姚明哲, 等. 中国茶树初级核心种质取样策略研究 [J]. 茶叶科学, 2009, 29(2): 159−167. DOI: 10.3969/j.issn.1000-369X.2009.02.012

刘娟, 廖康, 曹倩, 等. 利用表型性状构建新疆野杏种质资源核心种质 [J]. 果树学报, 2015, 32(5): 787−796.

杨汉波, 张蕊, 王帮顺, 等. 基于SSR标记的木荷核心种质构建 [J]. 林业科学, 2017, 53(6): 37−46. DOI: 10.11707/j.1001-7488.20170605

de Cristo-Araújo M, Rodrigues D P, Astolfi-Filho S, et al. Peach palm core collection in Brazilian Amazonia [J]. Crop Breeding and Applied Biotechnology, 2015, 15(1): 18−25. DOI: 10.1590/1984-70332015v15n1a3

李珊, 甘小洪, 憨宏艳, 等. 濒危植物水青树叶的表型性状变异 [J]. 林业科学研究, 2016, 29(5): 687−697. DOI: 10.3969/j.issn.1001-1498.2016.05.010

刘德浩, 张方秋, 张卫华. 基于地理种源分组和表型数据构建尾叶桉核心种质 [J]. 西南林业大学学报, 2013, 33(5): 1−8. DOI: 10.3969/j.issn.2095-1914.2013.05.001

戴宝合. 野生植物资源学[M]. 北京: 中国农业出版社, 2003.

黎祖尧, 陈尚钘. 江西樟树[M]. 南昌: 江西科学技术出版社, 2015.

国家林业局. 国家重点保护野生植物名录: 第1批: 第4号令[Z]. 北京: 国家林业局, 农业部, 1999.

钟永达, 赵善文, 程泽龙, 等. 基于种苗表型初步构建中国樟树核心种质 [J]. 江西农业大学学报, 2019, 41(1): 81−89.

钟永达, 周燕玲, 李彦强, 等. 基于ImageJ软件的香樟千粒重的测量及其应用 [J]. 安徽农学通报, 2018, 24(10): 82−85. DOI: 10.3969/j.issn.1007-7731.2018.10.036

钟永达, 李彦强, 刘立盘, 等. 基于扫描仪和ImageJ软件的香樟种子测量与种源分析 [J]. 西南林业大学学报(自然科学), 2017, 37(6): 48−53.

李自超, 张洪亮, 孙传清, 等. 植物遗传资源核心种质研究现状与展望 [J]. 中国农业大学学报, 1999, 4(5): 51−62. DOI: 10.3321/j.issn:1007-4333.1999.05.010

张洪亮, 李自超, 曹永生, 等. 表型水平上检验水稻核心种质的参数比较 [J]. 作物学报, 2003, 29(2): 252−257. DOI: 10.3321/j.issn:0496-3490.2003.02.016

Hu J, Zhu J, Xu H M. Methods of constructing core collections by stepwise clustering with three sampling strategies based on the genotypic values of crops [J]. Theoretical and Applied Genetics, 2000, 101(1/2): 264−268.

Diwan N, McIntosh M S, Bauchan G R. Methods of developing a core collection of annual Medicago species [J]. Theoretical and Applied Genetics, 1995, 90(6): 755−761. DOI: 10.1007/BF00222008

雷刚, 周坤华, 方荣, 等. 基于表型数据的辣椒核心种质构建研究 [J]. 西北植物学报, 2016, 36(4): 804−810. DOI: 10.7606/j.issn.1000-4025.2016.04.0804

郝晓鹏, 王燕, 田翔, 等. 基于农艺性状的山西普通菜豆初级核心种质构建 [J]. 植物遗传资源学报, 2016, 17(5): 815−823.

刘鑫铭, 刘崇怀, 樊秀彩, 等. 葡萄种质资源初级核心群的构建 [J]. 植物遗传资源学报, 2012, 13(1): 72−76. DOI: 10.3969/j.issn.1672-1810.2012.01.012

Malosetti M, Abadie T. Sampling strategy to develop a core collection of Uruguayan maize landraces based on morphological traits [J]. Genetic Resources and Crop Evolution, 2001, 48(4): 381−390. DOI: 10.1023/A:1012003611371

赵丽梅, 董英山, 刘宝, 等. 中国一年生野生大豆(Glycine soja)核心资源构建 [J]. 科学通报, 2005, 50(10): 992−999. DOI: 10.3321/j.issn:0023-074X.2005.10.010

邱丽娟, 曹永生, 常汝镇, 等. 中国大豆(Glycine max)核心种质构建Ⅰ: 取样方法研究 [J]. 中国农业科学, 2003, 36(12): 1442−1449. DOI: 10.3321/j.issn:0578-1752.2003.12.004

徐海明, 胡晋, 朱军. 构建作物种质资源核心库的一种有效抽样方法 [J]. 作物学报, 2000, 26(2): 157−162. DOI: 10.3321/j.issn:0496-3490.2000.02.005

王莉萍. 海岛棉表型性状遗传多样性分析及核心种质构建方法的研究[D]. 乌鲁木齐: 新疆农业大学, 2016.

刘遵春, 刘大亮, 崔美, 等. 整合农艺性状和分子标记数据构建新疆野苹果核心种质 [J]. 园艺学报, 2012, 39(6): 1045−1054.

魏志刚, 高玉池, 刘桂丰, 等. 白桦核心种质初步构建 [J]. 林业科学, 2009, 45(10): 74−80. DOI: 10.11707/j.1001-7488.20091013

李洪果, 杜红岩, 贾宏炎, 等. 利用表型性状构建杜仲雄性资源核心种质 [J]. 分子植物育种, 2018, 16(2): 591−601.

郭琰. 狗牙根表型遗传多样性分析及核心种质构建研究[D]. 洛阳: 河南科技大学, 2015.

曾宪君. 欧洲黑杨(Populus nigra L.)优质核心种质库构建研究[D]. 北京: 中国林业科学研究院, 2014.

崔艳华, 邱丽娟, 常汝镇, 等. 植物核心种质研究进展 [J]. 植物遗传资源学报, 2003, 4(3): 279−284. DOI: 10.3969/j.issn.1672-1810.2003.03.021

田郎, 方家林, 黄华孙. 作物种质资源核心种质研究及其应用 [J]. 江西农业大学学报, 2003, 25(S1): 1−5.

栾明宝, 陈建华, 许英, 等. 苎麻核心种质构建方法 [J]. 作物学报, 2010, 36(12): 2099−2106.

徐宁, 程须珍, 王素华, 等. 以地理来源分组和利用表型数据构建中国小豆核心种质 [J]. 作物学报, 2008, 34(8): 1366−1373.

郑轶琦, 郭琰, 房淑娟, 等. 利用表型数据构建狗牙根初级核心种质 [J]. 草业学报, 2014, 23(4): 49−60. DOI: 10.11686/cyxb20140406

代攀虹, 孙君灵, 贾银华, 等. 利用表型数据构建陆地棉核心种质 [J]. 植物遗传资源学报, 2016, 17(6): 961−968.

Li Z T, Zhong Y D, Yu F X, et al. Novel SSR marker development and genetic diversity analysis of Cinnamomum camphora based on transcriptome sequencing [J]. Plant Genetic Resources: Characterization and Utilization, 2018, 16(6): 568−571. DOI: 10.1017/S147926211800014X

Cited By

Cited by

Periodical cited type(12)

1.	陈建华，曲凯伦，张云程，孙永强，李彪，康莹，董胜君. 基于表型性状的酸枣核心种质构建. 沈阳农业大学学报. 2024(02): 176-186 .
2.	张蕾，徐立，李焕苓，洪继旺，杨子琴，李松刚，王家保. 荔枝资源收集、保存和利用现状. 科技导报. 2023(04): 50-57 .
3.	邹广权，王晓丽，李艳，曹现富，李华，付朴艳，唐君培，李妹，曹子林. 基于表现型值构建旱冬瓜核心种质研究. 西南农业学报. 2023(08): 1644-1652 .
4.	娄永峰，朱柯帆，宋晓琛，冷春晖，陈兴彬，肖复明. 基于SSR标记构建江西杉木核心种质及其分子身份证. 林业科学研究. 2023(06): 78-86 .
5.	孙永强，陈建华，张剑，董胜君，刘权钢，刘青柏. 基于表型性状的西伯利亚杏核心种质构建. 沈阳农业大学学报. 2022(01): 43-54 .
6.	朱雪梅，郭广君，潘宝贵，刁卫平，刘金兵，高长洲，高海涛，王述彬. 辣椒核心种质研究进展. 江西农业学报. 2022(04): 8-12+20 .
7.	曾钦朦，曾亚军，陈胜群，侯娜. 贵州核桃核心种质筛选与构建研究. 西北植物学报. 2022(05): 865-873 .
8.	陈升侃，陆绍峰，李昌荣，韦炳俭，唐庆兰，郭东强，陈健波，邓紫宇. 基于生长和抗病性状构建斑皮柠檬桉核心种质. 分子植物育种. 2022(21): 7295-7302 .
9.	魏志恒，吴际友，程勇，陈明皋，张珉，廖德志，张平，刘欲晓，龙三元，江斌. 多地点樟树家系遗传参数估算与综合选择. 中南林业科技大学学报. 2021(06): 51-58 .
10.	王琼，刘远杰，陈江格，李志猛，刘玮，姜雪茹，喻苏琴. Pb胁迫下丛枝菌根真菌对樟树幼苗生长和生理的影响. 江西农业大学学报. 2021(03): 621-629 .
11.	孔祥瑞，杨军，林梓溪，马定国，王让剑，陈常颂. 基于香气物质进行乌龙茶核心种质构建与遗传评估. 茶叶学报. 2021(03): 105-111 .
12.	李魁鹏，陈仕昌，程琳，贺锦锋，唐红亮，谭文婧，余代渊，王斌，莫宗恒，黄开勇. 基于SSR标记构建广西杉木核心种质. 广西科学. 2021(05): 511-519 .

Other cited types(9)

Get Citation

PDF

XML

Article views (4590) PDF downloads (69) Cited by(21)

Turn off MathJax

Article Contents

Abstract

References

Sampling Strategy of Primary Core Germplasm of Cinnamomum camphora in China

Abstract

References

Cited by

Periodical cited type(12)

Other cited types(9)

Catalog

Export File

Citation

Format

Content