徐志文, 任雪敏, 王俊, 张枝全, 刘乃勇, 阎伟, 朱家颖. 椰子织蛾转录组分析[J]. 西南林业大学学报, 2018, 38(5): 38-45. DOI: 10.11929/j.issn.2095-1914.2018.05.007
引用本文: 徐志文, 任雪敏, 王俊, 张枝全, 刘乃勇, 阎伟, 朱家颖. 椰子织蛾转录组分析[J]. 西南林业大学学报, 2018, 38(5): 38-45. DOI: 10.11929/j.issn.2095-1914.2018.05.007
Zhiwen Xu, Xuemin Ren, Jun Wang, Zhiquan Zhang, Naiyong Liu, Wei Yan, Jiaying Zhu. Transcriptome Analysis of Opisina arenosella[J]. Journal of Southwest Forestry University, 2018, 38(5): 38-45. DOI: 10.11929/j.issn.2095-1914.2018.05.007
Citation: Zhiwen Xu, Xuemin Ren, Jun Wang, Zhiquan Zhang, Naiyong Liu, Wei Yan, Jiaying Zhu. Transcriptome Analysis of Opisina arenosella[J]. Journal of Southwest Forestry University, 2018, 38(5): 38-45. DOI: 10.11929/j.issn.2095-1914.2018.05.007

椰子织蛾转录组分析

Transcriptome Analysis of Opisina arenosella

  • 摘要: 为获取入侵性检疫害虫椰子织蛾的基因信息,利用高通量测序技术对该害虫进行了转录组测序。结果表明:经拼接共获得了37 416条unigenes,平均长度为803 bp,N50为1 415 bp;通过BlastX比对,有19 154条unigenes(51.19%)成功在Nr中被注释。在Nr中成功注释的unigene,与黑脉金斑蝶同源性最高,达到68.45%;在GO注释中,共有14 131(37.76%)条unigenes被成功注释到细胞组分、分子功能和生物过程3大类的54个分支;在COG数据库中,成功注释的8 606条unigenes被注释到26个分类;在KEGG中,共有6 171条(16.49%)unigenes被注释到5大类通路的260条途径上。基于构建的转录组数据库,鉴定得到3 248个微卫星。

     

    Abstract: In order to obtain genetic data for Opisina arenosella, this study sequenced its transcriptome using high-throughput sequencing technology. In total, 37 416 unigenes were obtained. Their mean length was 803 bp with N50 of 1 415 bp. By BlastX search, a total of 19 154 unigenes were matched to the sequences in NCBI non-redundant protein sequences (Nr) database. They had the highest similarity(68.45%)to those of Danaus plexippus. In Gene Ontology (GO) database, 14 131 unigenes (37.76%) were assigned to 54 branches of 3 categories including cellular component, biological processes and molecular function. In Clusters of Orthologous Groups of proteins (COG) database, 8 606 unigenes were assigned to 26 categories. Additionally, 6 171 unigenes (16.49%) were mapped to Kyoto Encyclopedia of Genes and Genomes (KEGG) database, of which were divided into 260 known pathways of 5 metabolic pathways categories. In total, 3 248 microsatellites were identified from the transcriptome database.

     

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