李兴艳, 梁文凯, 泽桑梓, 等. 松瘤小蠹线粒体基因组测序及分析[J]. 西南林业大学学报(自然科学), 2024, 44(1): 194–199 . DOI: 10.11929/j.swfu.202206033
引用本文: 李兴艳, 梁文凯, 泽桑梓, 等. 松瘤小蠹线粒体基因组测序及分析[J]. 西南林业大学学报(自然科学), 2024, 44(1): 194–199 . DOI: 10.11929/j.swfu.202206033
Li Xingyan, Liang Wenkai, Ze Sangzi, Zhao Ning, Zhu Jiaying. Sequencing and Analysis of the Mitochondrial Genome of Orthotomicus erosus[J]. Journal of Southwest Forestry University, 2024, 44(1): 194-199. DOI: 10.11929/j.swfu.202206033
Citation: Li Xingyan, Liang Wenkai, Ze Sangzi, Zhao Ning, Zhu Jiaying. Sequencing and Analysis of the Mitochondrial Genome of Orthotomicus erosus[J]. Journal of Southwest Forestry University, 2024, 44(1): 194-199. DOI: 10.11929/j.swfu.202206033

松瘤小蠹线粒体基因组测序及分析

Sequencing and Analysis of the Mitochondrial Genome of Orthotomicus erosus

  • 摘要: 松瘤小蠹广泛分布于欧亚大陆多国以及我国危害松科植物,但尚缺乏其分子鉴定和种群遗传结构方面的研究。鉴于此,本研究基于高通量测序技术测定了该害虫的线粒体基因组序列,使用GetOrganelle软件组装得到了其完整线粒体基因组。结果表明:松瘤小蠹的线粒体基因组长17451 bp,包含13个蛋白编码基因,22个tRNA和2个rRNA,A、T、C、G所占的比例分别为37.4%、33.45%、18.40%和10.75%。基于松瘤小蠹以及其他象甲科物种线粒体基因组序列构建系统发育树分析发现,松瘤小蠹与边瘤小蠹的亲缘关系较近,处于同一分支上,与传统的形态学分类相一致。该研究结果为今后筛选线粒体分子标记来开展松瘤小蠹分子鉴定和种群遗传结构研究奠定了基础。

     

    Abstract: Orthotomicus erosus(Coleoptera: Curculionidae) is widely distributed in Eurasia and China. It is a pest that damages pine trees. But the studies on the molecular identification and population genetic structure of this pest are still lacking. In view of this, the genomic sequences of this pest were sequenced with high-throughput sequencing technology, which leads to assemble its complete mitochondrial genome using GetOrganelle software. The results confirm that its mitogenome is 17 451 bp in length, containing 13 protein-coding genes, 22 tRNA and 2 rRNA genes. Nucleotide compositions of its whole mitogenome are 37.4% for A, 33.45% for T, 18.4% for C, and 10.75% for G. Phylogenetic tree analysis using the sequences of the mitochondrial genomes of O. erosus and other Curculionidae species showed that O. erosus is closely related to O. laricis. These 2 species are grouped on the same branch, which is in accordance with the traditional morphological classification. The results of this study lay a foundation for screening molecular markers of mitochondrion for molecular identification and genetic structure research in O. erosus.

     

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