邹智, 杨礼富, 安锋, 王真辉, 袁坤. 大戟科植物MVK基因家族的全基因组鉴定与分析[J]. 西南林业大学学报, 2013, 33(4): 64-71. DOI: 10.3969/j.issn.2095-1914.2013.04.013
引用本文: 邹智, 杨礼富, 安锋, 王真辉, 袁坤. 大戟科植物MVK基因家族的全基因组鉴定与分析[J]. 西南林业大学学报, 2013, 33(4): 64-71. DOI: 10.3969/j.issn.2095-1914.2013.04.013
ZOU Zhi, YANG LiFu, AN Feng, WANG ZhenHui, YUAN Kun. GenomeWide Identification and Analysis of MVK Gene Family in Euphorbiaceae Plants[J]. Journal of Southwest Forestry University, 2013, 33(4): 64-71. DOI: 10.3969/j.issn.2095-1914.2013.04.013
Citation: ZOU Zhi, YANG LiFu, AN Feng, WANG ZhenHui, YUAN Kun. GenomeWide Identification and Analysis of MVK Gene Family in Euphorbiaceae Plants[J]. Journal of Southwest Forestry University, 2013, 33(4): 64-71. DOI: 10.3969/j.issn.2095-1914.2013.04.013

大戟科植物MVK基因家族的全基因组鉴定与分析

GenomeWide Identification and Analysis of MVK Gene Family in Euphorbiaceae Plants

  • 摘要: 基于已公布的基因组和EST数据,对蓖麻、麻疯树、木薯和橡胶树4种大戟科植物的MVK基因家族进行系统鉴定,并在此基础上分析其基因结构与进化关系。结果表明,这4种植物均含有2个MVK基因,所有基因均含有4个内含子。同源分析表明,MVK广泛存在于各种古细菌、真细菌和真核生物中,显示出较早的起源;虽然MVK在大多数基因组已测序的物种中主要以单拷贝的形式存在,但在所研究的4种大戟科植物中均出现了基因加倍现象,这与玉米和杨树类似。基因表达谱分析显示,在蓖麻的叶片、花、II/III期胚乳、V/VI期胚乳和种子等组织中,RcMVK1的表达丰度总体高于RcMVK2;虽然2个基因表达丰度最高的组织均为II/III期胚乳,但丰度最低的组织却分别为种子和叶片。

     

    Abstract: The mevalonate kinase (MVK) gene family of four plant species from Euphorbiaceae family i.e., castor bean (Ricinus communis), physic nut (Jatropha curcas), cassava (Manihot esculenta) and rubber tree (Hevea brasiliensis) was identified systematically based on the published genomewide and EST data, and the gene structure and the revolutionary relations of these species were analyzed consequently. The results showed that there were 2 MVK genes in all of the four plant species respectively, and all of the genes contained 4 introns. Homologous analyses revealed that MVK genes were widely distributed in different organisms including archaea, eubacteria and eukaryotes, suggesting an early origin of this gene family. Although a single copy of MVK gene was identified in most genome released species, gene amplification was found in these four Euphorbiaceae plant species similarly as in maize and poplar. The analyses on digital expression profiling suggested that in the leaf, flower, II/III stage endosperm, V/VI stage endosperm and seed organ tissues, the expression level of RcMVK1 was generally higher than that of RcMVK2. The highest expression of both the two genes was found in II/III stage endosperm, the lowest expression of RcMVK1 was in seed, whereas the lowest expression of RcMVK2 was in leaf tissue.

     

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